ChIP-Atlas: SRX190196

Antigen

GEO Accession: GSM1010740
antibody antibodydescription: Mouse monoclonal IgG, specific for an epitope mapping between a.a. 515-555 within an internal region of MBD4 of mouse origin. Antibody Target: MBD4
antibody targetdescription: MBD4 may function to mediate the biological consequences of the methylation signal. In addition, MBD4 has protein sequence similarity to bacterial DNA repair enzymes and thus may have some function in DNA repair. Further, MBD4 gene mutations are detected in tumors with primary microsatellite-instability (MSI), a form of genomic instability associated with defective DNA mismatch repair, and MBD4 gene meets 4 of 5 criteria of a bona fide MIS target gene. (provided by RefSeq)
antibody vendorid: sc-271530
antibody vendorname: Santa Cruz Biotechnology
antibody: MBD4_(SC-271530)
cell description: hepatocellular carcinoma
cell karyotype: cancer
cell lineage: endoderm
cell organism: human
cell sex: M
cell: HepG2
controlid: SL6019
datatype description: Chromatin IP Sequencing
datatype: ChipSeq
lab description: Myers - Hudson Alpha Institute for Biotechnology
lab: HudsonAlpha
labexpid: SL8132,SL7901
protocol description: Faster ChIP protocol & AMpure XP size selection for ChIP-seq (Myers)
protocol: v042211.1
replicate: 1,2
softwareversion: MACS
treatment description: No special treatment or protocol applies
treatment: None

library_name: GSM1010740: HudsonAlpha_ChipSeq_HepG2_MBD4_(SC-271530)_v042211.1
library_strategy: ChIP-Seq
library_source: GENOMIC
library_selection: ChIP
library_construction_protocol: Instrument model unknown. ("Illumina Genome Analyzer" specified by default). For more information, see http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeHaibTfbs